We provide complete analysis workflows for our studies. The complete collection of software packages are available at:
clustifyr classifies cells and clusters in single-cell RNA sequencing
experiments using reference bulk RNA-seq data sets, sorted microarray
expression data, single-cell gene signatures, or lists of marker genes.
valr provides tools to read and manipulate genome intervals
and signals, similar to the BEDtools suite. valr enables analysis in the
R/RStudio environment, leveraging modern R tools in the tidyverse for a
terse, expressive syntax.